본문 바로가기 하단 바로가기

The EST division of GenBank, dbEST, is widely used in many applications such as gene discovery and verification of exon–intron structure. However, the use of EST sequences in the dbEST libraries is often hampered by inconsistent terminology used to describe the library sources and by the presence of contaminated sequences. Here, we describe CleanEST, a novel database server that classified dbEST libraries and removes contaminants. We classified all dbEST libraries according to species and sequencing center. In addition, we further classified human EST libraries by anatomical and pathological systems according to eVOC ontologies. For each dbEST library, we provide two different cleansed sequences: ‘pre-cleansed’ and ‘usercleansed’. To generate pre-cleansed sequences, we cleansed sequences in dbEST by alignment of EST sequences against well-known contamination sources: UniVec, Escherichia coli, mitochondria and chloroplast (for plant). To provide user-cleansed sequences, we built an automatic user-cleansing pipeline, in which sequences of a user-selected library are cleansed on-the-fly according to userselected options. The server is available at http://cleanest.kobic.re.kr/ and the database is updated monthly.

Total Count: 1,185

NO. EST Name Library Name Organism Tissue Type Library Info Download Link
1 NABRZ69TF LIBEST_018203 Aedes aegypti - MOYO-R strain, adult females at 24 h, 3 days, 8 days, and 12 다운로드링크 이미지
2 AEDAT83TFB LIBEST_018200 Aedes aegypti re-sequenced clones from a mixture of - 다운로드링크 이미지
3 NABMM87TF LIBEST_018202 Aedes aegypti adult females at 24 h, 3 days and 12 days post feeding on a - 다운로드링크 이미지
4 NAAF834TF LIBEST_018201 Aedes aegypti fat body tissues from adult females at 12 h intervals from 0 - 다운로드링크 이미지
5 AB212072 LIBEST_018264 Alexandrium catenella - - 다운로드링크 이미지
6 EST001 LIBEST_006258 Apis mellifera - The library was prepared by Stratagene using oligo-T and 다운로드링크 이미지
7 EST202 LIBEST_006259 Apis mellifera - The library was prepared by Stratagene using oligo-T and 다운로드링크 이미지
8 AF283260 LIBEST_006256 Anopheles gambiae - immune-responsive 다운로드링크 이미지
9 KM1C07 LIBEST_011987 Arabidopsis thaliana two week old seedlings cDNA names that include 'HR' are from the roots of 다운로드링크 이미지
10 EST00007 LIBEST_011972 Aegilops tauschii leaf mRNA/cDNA 다운로드링크 이미지
1 2 3 4 5 6 7 8 9 10 다음 페이지